PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG108100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 324aa    MW: 35242.5 Da    PI: 5.69
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG108100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-07136180554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h +rEr+RR+++ ++++ L  ++  +      K +K +i++ A  YI++L
  Pavir.9NG108100.1.p 136 HMMRERQRREKLSQSYADLYAMVAAR-----SKGDKNSIVQSAAIYIHEL 180
                          889**********************7.....6999999*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-11131201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.395131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.51E-8135185No hitNo description
Gene3DG3DSA:4.10.280.105.8E-9135198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5136180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-5137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MQMDSYLYAG FFHDEAAFYP QGAVPPSPEL PFGLIASPGE PAPPFQPPEA PRPAAFQDYS  60
VAEPELLAQA VGAGEPHYGS SGPSVNMRVV DALGGMGGDP VHDQTMGEEW EEEPRRQRQQ  120
QQPAGAAVES SRGFRHMMRE RQRREKLSQS YADLYAMVAA RSKGDKNSIV QSAAIYIHEL  180
KGAREQLLRR NEELKARILG HDARQQCVKV QFEVDEPASA IDSMIGALRR LKGMDVRARG  240
IRSTMSGRRL WTEMNVETTI AAGDVEKAVE EALMQEVERN QPQPQPAEAG SGGGGPGLPG  300
TSAGARGWGP QTSPHVQNVF RLM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.130370.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9556231e-176EU955623.1 Zea mays clone 1539864 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698378.11e-169PREDICTED: uncharacterized protein LOC105913503
SwissprotQ75KV91e-109BH148_ORYSJ; Transcription factor BHLH148
TrEMBLK4ACV91e-169K4ACV9_SETIT; Uncharacterized protein
STRINGSi036716m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.19e-24bHLH family protein